Appendix 3. Presence /Absence coding data matrix. The letters below each character number represent the alleles or allelic arrays for each presumptive locus. The loci correspond to the characters as follows: mACON: 1-9, sACON, 10-16, ADH: 17-22,; AP: 23-30, CAT: 31-41, GCDH: 42-48, GPI: 49-60, GTDH: 61-65, ICDH: 66-71, IDDH: 72-76, LDH-A: 77-91, LDH-B: 92-102, PEP-B: 103-107, PEP-S: 108-113, PEP-D: 114-117, PGDH-1: 118-125, PGDH-2: 126-133, PGM: 134-140, SOD: 141-153, LDH heteropolymer assembly: 154. |
Amastridium veliferum | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000001000 | 00???????? | 0100000000 | 0???????00 | 0000000100 | 0100000001 | 0001000000 | 0000001000 | 0000000100 | 0000001001 | 0001000100 | 00000????? | ???0000001 | 1000000000 | 0004 |
Alsophis antillensis | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000001000 | 0010000000 | 0010000000 | 0010000000 | 0001000000 | 1000000000 | 1000100010 | 0000000000 | 0001000000 | 0010000100 | 0001000010 | 0000000001 | 0001000000 | 0001000000 | 0003 |
Alsophis cantherigerus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000000 | 0100000000 | 0010000000 | 0000100000 | 1000001000 | 0100000010 | 0000000000 | 0001000000 | 0010000100 | 0001000010 | 0000000001 | 0001010000 | 0001010000 | 0003 |
Alsophis elegans | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 0110000100 | 0010000000 | 0010001000 | 0010000000 | 0001000000 | 1000010000 | 0000100010 | 0000000000 | 0001000000 | 0010000100 | 0001000010 | 0000000001 | 0001000000 | 0000000110 | 0003 |
Alsophis portoricensis | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000000 | 1000000000 | 0100000000 | 0000100000 | 0001000000 | 1100000010 | 0000000000 | 0001000000 | 0010000100 | 0001000010 | 0000000001 | 0001000000 | 1000000000 | 0003 |
Alsophis rijersmai | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000001000 | 0010000000 | 0010000000 | 0000100000 | 0001000000 | 0001000001 | 0000010010 | 0000000000 | 0001000000 | 0010000100 | 0001000010 | 0000000001 | 0001000000 | 1000000000 | 0003 |
Alsophis vudii | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1100000000 | 1000000100 | 0010000000 | 0110000000 | 0010000000 | 0000100000 | 1000010000 | 0100000010 | 0000000000 | 0001000000 | 0010000100 | 0001000010 | 0000000001 | 0001000000 | 0001000000 | 0003 |
Antillophis parvifrons | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000000 | 1000000000 | 0100000000 | 0001000000 | 1000000000 | 1000101001 | 0000000000 | 0010000000 | 0000100000 | 1001000010 | 0000010001 | 0001000000 | 1000000000 | 0004 |
Arrhyton callilaemum | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000010000 | 1000000100 | 0010000000 | 1000000000 | 0100000000 | 0001100000 | 0100000000 | 1100000000 | 1000000000 | 0010000000 | 0000001010 | 0001000010 | 0000010000 | 0001000000 | 0001000000 | 0004 |
Arrhyton exiguum | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000000100 | 0001100000 | 0110000000 | 0000100000 | 1000000000 | 1000010000 | 0100000000 | 0000100000 | 0010000000 | 0010000100 | 0001000000 | 0000100100 | 0011000000 | 0000100000 | 0001 |
Arrhyton funereum | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000010000 | 1000000100 | 0010001000 | 1000100000 | 0100000000 | 1000000000 | 0100000000 | 1100000100 | 0000000000 | 0010000000 | 0000001010 | 0000010010 | 0000010000 | 0000001010 | 0001010000 | 0002 |
Arrhyton landoi | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000100 | 1000010000 | 0110000010 | 0000000000 | 1000010010 | 0010000000 | 0000010000 | 0001000000 | 0000001001 | 0001000000 | 0000100100 | 0011000000 | 1000000000 | 0004 |
Arrhyton polylepis | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0010000000 | 1000000100 | 0000001000 | 0000100000 | 0000100000 | 1000000000 | 1000000000 | 1100000100 | 0000000000 | 0010000000 | 0000001010 | 0000010010 | 0000010000 | 0000011000 | 0001000000 | 0002 |
Arrhyton taeniatum | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000000 | 1000000000 | 0000100000 | 0100000000 | 1000010000 | 0?????0000 | 1000000000 | 0010000000 | 0000001001 | 0001000100 | 00000????? | ???0000001 | 0001000000 | 0004 |
Coniophanes fissidens | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000001 | 0000000010 | 0010010000 | 1001000000 | 0010000010 | 0000000000 | 0001000000 | 1?????0000 | 0010000000 | 0000000001 | 0010000000 | 001????001 | 00000????? | ???1000000 | 0001000000 | 0001 |
Conophis lineatus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 100000???? | ?????????? | ?????????? | ????????01 | 0000000000 | 0001001000 | 0?????0000 | 0010000000 | 0000000001 | 00???????? | ???????000 | 10000????? | ???1000000 | 0001000000 | 0004 |
Crisantophis nevermanni | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 000010???? | ??10000000 | 1000000000 | 0????????? | ?????????? | 1000000000 | 1?????0000 | 0010000000 | 0000000001 | 0001000010 | 000????100 | 00000????? | ???1000000 | 0001000000 | 0004 |
Darlingtonia haetiana | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000000100 | 0010000000 | 1000000000 | 0100000000 | 0001000000 | 0110010000 | 1100000000 | 0100000000 | 0001000000 | 0000100010 | 0000100010 | 0100010000 | 0101011000 | 0001000000 | 000? |
Enulius flavitorques | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000010001 | 000000???? | ?????????? | ?????????? | ????????10 | 0000000000 | 1000000000 | 1?????0000 | 0010000000 | 0000000001 | 00???????? | ???????010 | 00000????? | ???1000000 | 0000000001 | 0004 |
Farancia abacura | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000000100 | 0010000000 | 1000000000 | 0100000000 | 0000100000 | 1000000000 | 1100000001 | 0000000000 | 0000000000 | 0101000100 | 0000010??? | ?????00100 | 0001000000 | 0001000000 | 0003 |
Geophis hoffmanni | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000000001 | 00???????? | ?????????? | ????????00 | 0000000010 | 1000000001 | 0?????0000 | 0010000000 | 0000000001 | 0001000010 | 000????100 | 00000????? | ???1000000 | 0000000000 | 0104 |
Geophis zeledoni | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000001000 | 0000000001 | 0000000100 | 0010000000 | 0000000010 | 1000000001 | 0?????0000 | 0000000100 | 0000100000 | 0001000010 | 000????100 | 00000????? | ???1000000 | 0000000000 | 1005 |
Hypsirhynchus ferox | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 0100000100 | 0010000000 | 1000000000 | 0100000000 | 1001000000 | 1000000000 | 1100000001 | 0000000000 | 0010000000 | 0000100100 | 0000001000 | 0000100010 | 0001000000 | 0100000000 | 0001 |
Ialtris dorsalis | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000000 | 1000000000 | 0000100000 | 0000100000 | 1000000010 | 0000100010 | 0000000000 | 0010000000 | 0010000100 | 0001000010 | 0000000001 | 0001000000 | 0001000000 | 0003 |
Imantodes _cenchoa | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000001000 | 0001000010 | 0000000001 | 0100000000 | 0010000000 | 0010000000 | 1100100000 | 1?????0000 | 0010000000 | 0000000010 | 0001000010 | 000????000 | 00100????? | ???0001100 | 0000000000 | 0014 |
Imantodes inornatus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000000101 | 0000000001 | 0000000001 | 0100000000 | 0010001001 | 0000000000 | 1000000000 | 1?????0000 | 0000000010 | 0000001000 | 0001000010 | 000????000 | 00100????? | ???1100001 | 0001000000 | 0001 |
Leptodeira septentrionalis | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000011 | 0000001010 | 1001001000 | 1111010001 | 0000100010 | 0000000000 | 1000000000 | 1?????0000 | 0010000000 | 0000000000 | 0100110100 | 0001000001 | 00100????? | ???1000000 | 0001000000 | 0105 |
Manolepis putnami | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 0100000100 | 0010000000 | 0000000010 | 0001000010 | 0000000000 | 1000000001 | 0?????0000 | 0001000000 | 0000000010 | 0010000100 | 0001000010 | 0000000000 | 1000100000 | 0010000000 | 0004 |
Nerodia fasciata | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000001 | 0000001000 | 0000000010 | 1000000000 | 0000100110 | 0000000000 | 0001001000 | 0?????0001 | 0000000000 | 0000000000 | 0100100100 | 0001000001 | 00100????? | ???1000100 | 0000000000 | 1003 |
Ninia maculata | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000100000 | 1000000000 | 10???????? | 0000000001 | 0???????00 | 0000000100 | 1000000000 | 1?????0001 | 0000000000 | 0000000000 | 0100100??? | ???1000100 | 00000????? | ???0100000 | 0000001000 | 0005 |
Ninia psephota | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000000010 | 010000???? | ?????????? | 0100000000 | 0???????00 | 0010000000 | 1000000000 | 1?????0001 | 0000000000 | 0000000000 | 0100100000 | 0101000100 | 00000????? | ???0100000 | 0001000000 | 0005 |
Oxyrhopus petola | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1000000100 | 0010000000 | 0010000000 | 0100000000 | 0000001000 | 0001000001 | 0?????0001 | 0000000000 | 0000010000 | 0000100000 | 100????001 | 00000????? | ???1000000 | 0000000000 | 0013 |
Rhadinaea calligaster | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000001000 | 0000001000 | 0110000000 | 0???????00 | 0001000000 | 0100000001 | 0001000001 | 0000000000 | 0000000000 | 1100000100 | 0001000100 | 0000000100 | 0001000000 | 0001000000 | 0003 |
Rhadinaea godmani | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0001000000 | 100000???? | ??00001000 | 0010000000 | 0???????00 | 0001000000 | 0100000001 | 0?????0001 | 0000000000 | 0000000000 | 1100000100 | 0001000000 | 0000100100 | 0001000000 | 0001000000 | 0003 |
Saphenophis sneiderni | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 0000010000 | 01???????? | 0000000000 | 1100000010 | 0000000000 | ?????10000 | 0?????0000 | 0000000001 | 0100000000 | 0??????000 | 100????010 | 00000????? | ???1000000 | 0000000100 | 0004 |
Sibon nebulata | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 100000???? | ??10000000 | 0100000000 | 0010000000 | 0010000000 | 1000010000 | 0?????0000 | 0001000000 | 0000000010 | 0001000000 | 100????010 | 00000????? | ???0100000 | 0000000000 | 1004 |
Tretanorhinus nigroluteus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 0010000000 | 10???????? | 0100000000 | 0010000000 | 0000000100 | 1000010000 | 0?????0000 | 0000000000 | 1000000000 | 1001001000 | 000????010 | 00000????? | ??01000000 | 0000001000 | 003 |
Uromacer catesbyi | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
1000000000 | 1010001100 | 0010000000 | 1100000000 | 0100000010 | 1001010000 | 1100010000 | 0100000000 | 1000000000 | 0010000000 | 0100001000 | 0001000100 | 0000001100 | 0001000000 | 1000000000 | 0004 |
Uromacer frenatus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1010001000 | 0010000000 | 0100000000 | 0100000010 | 1001000000 | 1000010000 | 0100000000 | 1000000000 | 0010000000 | 0100001000 | 0001000100 | 0000010100 | 0001000000 | 1000000000 | 0004 |
Uromacer oxyrhynchus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0100000000 | 1000001000 | 0010000000 | 0100000000 | 0100000010 | 0001000000 | 1000010000 | 0100000000 | 1000000000 | 0010000000 | 0100001000 | 0001000100 | 0000000100 | 0001000000 | 1000000000 | 0004 |
Urotheca guentheri | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000001000 | 0001001000 | 0000001000 | 0010000000 | 0000010000 | 0001000000 | 0100000001 | 0001000001 | 0000000000 | 0000000000 | 1100000100 | 0001000000 | 0000100100 | 0001000000 | 0001000000 | 0003 |
Xenodon rabdocephalus | 40 | 50 | 60 | 70 | 80 | 90 | 100 | 110 | 120 | 130 | 140 | 150 | |||
0000100000 | 0100000100 | 0010000000 | 0100000000 | 0???????00 | 0000000001 | 1000001000 | 0????????? | ?????????? | ?010000000 | 0001001000 | 000????000 | 00010????? | ???0100000 | 0000000000 | 0011 |